recipe microhapulator

Tools for empirical microhaplotype calling, forensic interpretation, and simulation.

Homepage:

https://github.com/bioforensics/MicroHapulator/

License:

BSD / BSD License

Recipe:

/microhapulator/meta.yaml

package microhapulator

Versions:

0.7.1-0,  0.6.1-0,  0.5-1,  0.5-0,  0.4.1-0,  0.3-0,  0.2-0,  0.1.3-0

Depends:

• biopython 1.78

• bwa >=0.7.17

• fastqc >=0.11.9

• flash >=1.2

• happer >=0.1

• insilicoseq >=1.5.4

• jsonschema >=3.1

• matplotlib-base >=3.0

• numpy >=1.15.4

• pandas >=1.0

• pysam >=0.15.2

• python >=3

• samtools >=1.12

• scipy >=1.7

• snakemake >=6.0

• termgraph >=0.5

• tqdm >=4.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install microhapulator

and update with:

conda update microhapulator

or use the docker container:

docker pull quay.io/biocontainers/microhapulator:<tag>

(see microhapulator/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/microhapulator/README.html)