recipe mikado

A Python3 annotation program to select the best gene model in each locus

Homepage

https://github.com/lucventurini/mikado

License

LGPL / GNU Lesser General Public License v3 or later (LGPLv3+)

Recipe

/mikado/meta.yaml

package mikado

Versions

2.0rc2-1,  2.0rc2-0,  1.2.4-0,  1.2.3-1,  1.2.2-1,  1.2.2-0,  1.2.1-0,  1.1.1-0,  1.0.2-0

Depends

• appdirs

• args

• biopython >=1.74

• datrie >=0.8

• decorator

• docutils

• drmaa

• fastnumbers

• hypothesis

• intervaltree

• jsonref >=0.2

• jsonschema

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• msgpack-python >=1.0.0

• networkx >=2.3

• numpy >=1.17

• pandas >=0.25.1

• pyfaidx >=0.5.8

• pysam >=0.15.3

• pytest >=5.4.1

• python >=3.6,<3.7.0a0

• python-rapidjson >=0.9.1

• python_abi 3.6.* *_cp36m

• pyyaml >=5.1.2

• rapidjson >=1.1.0

• scikit-learn >=0.21.3

• scipy >=1.3.1

• six >=1.12.0

• snakemake-minimal >=5.7.0

• sqlalchemy >=1.3.9

• sqlalchemy-utils >=0.34.1

• sqlite >=3.32.3,<4.0a0

• tabulate >=0.8.5

• toml >=0.10.0

• tomlkit >=0.5.8

• wheel >=0.28.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mikado

and update with:

conda update mikado

or use the docker container:

docker pull quay.io/biocontainers/mikado:<tag>

(see mikado/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mikado/README.html)