recipe mimi

Molecular Isotope Mass Identifier.

Homepage:

https://github.com/NYUAD-Core-Bioinformatics/MIMI

License:

Academic and Non-Commercial Research Use

Recipe:

/mimi/meta.yaml

MIMI (Molecular Isotope Mass Identifier) is a tool for analyzing mass spectrometry data to identify molecular compounds based on their isotopic patterns.

package mimi

(downloads) docker_mimi

versions:

1.0.1-0,  1.0.0-0

depends json5:

depends numpy:

depends pandas:

depends python:

>=3.11

depends setuptools:

depends tqdm:

depends urllib3:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mimi

and update with::

   mamba update mimi

To create a new environment, run:

mamba create --name myenvname mimi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mimi:<tag>

(see `mimi/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mimi/README.html)