recipe minipolish

A tool for Racon polishing of miniasm assemblies

Homepage:

https://github.com/rrwick/Minipolish

License:

GPLv3

Recipe:

/minipolish/meta.yaml

package minipolish

versions:

0.1.3-0,  0.1.2-0

depends minimap2:

depends python:

>=3

depends python-edlib:

depends racon:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install minipolish

and update with::

   mamba update minipolish

To create a new environment, run:

mamba create --name myenvname minipolish

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/minipolish:<tag>

(see `minipolish/tags`_ for valid values for ``<tag>``)

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