recipe minisplice

minisplice is a command-line tool to estimate the odds-ratio score of canonical donor (GT) and acceptor (AG) splice sites. It is intended to be used with miniprot or minimap2 for improving alignment accuracy especially for distant homologs..

Homepage:

https://github.com/lh3/minisplice

Documentation:

https://github.com/lh3/minisplice/blob/v0.4/README.md

License:

MIT / MIT

Recipe:

/minisplice/meta.yaml

Links:

doi: 10.48550/arXiv.2506.12986

package minisplice

(downloads) docker_minisplice

versions:

0.4-0

depends libgcc:

>=13

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install minisplice

and update with::

   mamba update minisplice

To create a new environment, run:

mamba create --name myenvname minisplice

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/minisplice:<tag>

(see `minisplice/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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