recipe mirge3

Comprehensive analysis of small RNA sequencing Data

Homepage:

https://github.com/mhalushka/miRge3.0/

Documentation:

https://mirge3.readthedocs.io/

License:

MIT / MIT

Recipe:

/mirge3/meta.yaml

Comprehensive analysis of small RNA sequencing data

package mirge3

Versions:

0.1.4-1,  0.1.4-0,  0.1.2-1,  0.1.2-0,  0.1.1-0,  0.0.9-0,  0.0.8-0,  0.0.7-0,  0.0.6-0, 

0.1.4-1,  0.1.4-0,  0.1.2-1,  0.1.2-0,  0.1.1-0,  0.0.9-0,  0.0.8-0,  0.0.7-0,  0.0.6-0,  0.0.5-0,  0.0.4-1,  0.0.4-0,  0.0.2-0,  0.0.1-0

Depends:

• bioconductor-deseq2

• biopython

• bowtie

• cutadapt

• future >=0.18.2

• joblib >=0.15.1

• matplotlib-base

• pandas

• python

• r-ggplot2

• reportlab >=3.5.42

• samtools

• scikit-learn

• scipy >=1.4.1

• viennarna

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mirge3

and update with:

conda update mirge3

or use the docker container:

docker pull quay.io/biocontainers/mirge3:<tag>

(see mirge3/tags for valid values for <tag>)

Download stats

Link to this page

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