recipe misopy

Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq

Homepage:

http://genes.mit.edu/burgelab/miso/

License:

GPL2 / GPL2

Recipe:

/misopy/meta.yaml

package misopy

versions:

0.5.4-5,  0.5.4-4,  0.5.4-3,  0.5.4-2,  0.5.4-1,  0.5.4-0

depends bedtools:

depends libgcc-ng:

>=10.3.0

depends matplotlib:

depends numpy:

>=1.5.0

depends pysam:

>=0.6.0

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends samtools:

<=1.2

depends scipy:

>=0.9.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install misopy

and update with::

   mamba update misopy

To create a new environment, run:

mamba create --name myenvname misopy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/misopy:<tag>

(see `misopy/tags`_ for valid values for ``<tag>``)

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