recipe mitgard

Mitochondrial Genome Assembly from RNA-seq Data.

Homepage:

https://github.com/pedronachtigall/MITGARD

License:

GPLv3

Recipe:

/mitgard/meta.yaml

Links:

https: :https:`//doi.org/10.1093/bib/bbaa429`

package mitgard

Versions:

1.0-1,  1.0-0

Depends:

• biopython 1.69.*

• bowtie2 2.3.*

• minimap2 2.17.*

• python >=3.6

• samtools 1.9.*

• spades 3.13.1.*

• trinity 2.8.5.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mitgard

and update with:

conda update mitgard

or use the docker container:

docker pull quay.io/biocontainers/mitgard:<tag>

(see mitgard/tags for valid values for <tag>)

Download stats

Link to this page

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