recipe mitofinder

Mitofinder is a pipeline to assemble mitochondrial genomes and annotate mitochondrial genes from trimmed read sequencing data.

Homepage:

https://github.com/RemiAllio/MitoFinder

License:

MIT

Recipe:

/mitofinder/meta.yaml

package mitofinder

Versions:

1.4.1-1,  1.4.1-0,  1.4-0

Depends:

• biopython

• blast

• idba

• libgcc-ng >=10.3.0

• megahit

• openjdk

• pandas

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• spades

• trnascan-se

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mitofinder

and update with:

conda update mitofinder

or use the docker container:

docker pull quay.io/biocontainers/mitofinder:<tag>

(see mitofinder/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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