recipe mitos

MITOS is a tool for the annotation of metazoan mitochondrial genomes. Besides MITOS the package contains scripts for the handing of mitochondrial genomes and their annotations.

Homepage

http://mitos.bioinf.uni-leipzig.de

Developer docs

https://gitlab.com/Bernt/MITOS

License

MIT / MIT

Recipe

/mitos/meta.yaml

package mitos

Versions

2.0.1-0, 1.0.1-1, 1.0.1-0

Depends

• biopython 1.73

• blast-legacy 2.2.*

• ete2 2.3.*

• hmmer 3.2.*

• infernal 1.1.*

• openjdk

• python <3

• r-base

• r-ggplot2 3.1.*

• reportlab

• viennarna <2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mitos

and update with:

conda update mitos

or use the docker container:

docker pull quay.io/biocontainers/mitos:<tag>

(see mitos/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mitos/README.html)