recipe mitos

MITOS is a tool for the annotation of metazoan mitochondrial genomes.

Homepage:

http://mitos.bioinf.uni-leipzig.de

Developer docs:

https://gitlab.com/Bernt/MITOS

License:

MIT / MIT

Recipe:

/mitos/meta.yaml

package mitos

Versions:

2.0.8-1,  2.0.8-0,  2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-1,  2.0.2-0,  2.0.1-0, 

2.0.8-1,  2.0.8-0,  2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-1,  2.0.2-0,  2.0.1-0,  1.0.5-1,  1.0.5-0,  1.0.4-0,  1.0.2-0,  1.0.1-1,  1.0.1-0

Depends:

• biopython

• blast 2.9.*

• hmmer 3.2.*

• infernal 1.1.*

• openjdk

• python <3

• r-base >=4

• r-ggplot2

• r-reshape2

• viennarna <2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mitos

and update with:

conda update mitos

or use the docker container:

docker pull quay.io/biocontainers/mitos:<tag>

(see mitos/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mitos/README.html)