recipe mlst

Scan contig files against PubMLST typing schemes

Homepage:

https://github.com/tseemann/mlst

License:

GPL / GPL-2.0

Recipe:

/mlst/meta.yaml

Links:

biotools: mlst

package mlst

Versions:

2.23.0-1,  2.23.0-0,  2.22.1-0,  2.22.0-0,  2.19.0-1,  2.19.0-0,  2.18.1-0,  2.18.0-0,  2.17.6-1, 

2.23.0-1,  2.23.0-0,  2.22.1-0,  2.22.0-0,  2.19.0-1,  2.19.0-0,  2.18.1-0,  2.18.0-0,  2.17.6-1,  2.17.6-0,  2.16.4-0,  2.16.2-1,  2.16.2-0,  2.16.1-0,  2.16-0,  2.15.2-0,  2.15.1-0,  2.15-0,  2.14-0,  2.13-0,  2.12-0,  2.11-0,  2.10-1,  2.10-0,  2.9-4,  2.9-3,  2.9-2,  2.9-1,  2.9-0,  2.6-0

Depends:

• any2fasta

• blast >=2.9.0

• curl

• parallel

• perl

• perl-bioperl >=1.7.2

• perl-file-which

• perl-json

• perl-list-moreutils

• perl-lwp-protocol-https

• perl-moo

• zlib

Required By:

• meningotype

• nullarbor

• bohra

• galru

• aquamis

• ngmaster

• staramr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mlst

and update with:

conda update mlst

or use the docker container:

docker pull quay.io/biocontainers/mlst:<tag>

(see mlst/tags for valid values for <tag>)

Download stats

Link to this page

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