recipe mlst

Scan contig files against PubMLST typing schemes

Homepage

https://github.com/tseemann/mlst

License

GPL / GPL-2.0

Recipe

/mlst/meta.yaml

Links

biotools: mlst

package mlst

(downloads) docker_mlst

Versions

2.16.2-0, 2.16.1-0, 2.16-0, 2.15.2-0, 2.15.1-0, 2.15-0, 2.14-0, 2.13-0, 2.12-0, 2.11-0, 2.10-1, 2.10-0, 2.9-1, 2.9-0, 2.6-0

Depends blast

>=2.7.1

Depends perl-bioperl

>=1.7.2

Depends perl-json

Depends perl-list-moreutils

Depends perl-moo

Depends zlib

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mlst

and update with:

conda update mlst

or use the docker container:

docker pull quay.io/biocontainers/mlst:<tag>

(see mlst/tags for valid values for <tag>)