recipe mob_suite

This package MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies. The MOB-suite is designed to be a modular set of tools for the typing and reconstruction of plasmid sequences from WGS assemblies.

Homepage:

https://github.com/phac-nml/mob-suite

License:

Apache-2.0

Recipe:

/mob_suite/meta.yaml

package mob_suite

Versions:

3.1.4-0,  3.1.2-0,  3.1.0-0,  3.0.3-0,  3.0.2-0,  3.0.1-0,  3.0.0-2,  3.0.0-1,  3.0.0-0, 

3.1.4-0,  3.1.2-0,  3.1.0-0,  3.0.3-0,  3.0.2-0,  3.0.1-0,  3.0.0-2,  3.0.0-1,  3.0.0-0,  2.1.0-0,  2.0.5-0,  2.0.2-1,  2.0.2-0,  2.0.1-1,  2.0.1-0,  2.0.0-0,  1.4.9.1-0,  1.4.9-1,  1.4.9-0,  1.4.8-0,  1.4.6-1,  1.4.5-1,  1.4.1-0

Depends:

• biopython >=1.70,<2

• blast >=2.9.0,<3

• ete3 >=3.0,<4

• mash >=2.0,<3

• numpy >=1.11.1,<1.23.5

• pandas >=0.22.0,<=1.0.5

• pycurl >=7.43,<8

• pytables >=3.3,<4

• python >=3.7,<4

• scipy >=1.1,<2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mob_suite

and update with:

conda update mob_suite

or use the docker container:

docker pull quay.io/biocontainers/mob_suite:<tag>

(see mob_suite/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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