recipe mqc

qualtiy control tool to assess the mapping quality of a ribosome profiling experiment

Homepage

https://github.com/Biobix/mQC

License

GNU General Public License v3.0

Recipe

/mqc/meta.yaml

package mqc

Versions

1.10-1, 1.10-0, 1.9-0, 1.8-0, 1.7-0, 1.6-0, 1.5-0, 1.4-0, 1.3-0, 1.2-3, 1.2-2, 1.2-1, 1.2-0

Depends

• matplotlib

• numpy

• pandas

• perl 5.22.0*

• perl-app-cpanminus

• perl-dbd-sqlite

• perl-dbi

• perl-parallel-forkmanager

• plastid 0.4.7 py27_0

• pysam 0.11*

• python 2.7*

• r-base 3.4.1*

• samtools

• seaborn

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mqc

and update with:

conda update mqc

or use the docker container:

docker pull quay.io/biocontainers/mqc:<tag>

(see mqc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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