recipe mrtrix3

A set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

Homepage:

https://www.mrtrix.org

Documentation:

https://www.mrtrix.org/documentation/

Developer docs:

https://github.com/MRtrix3/mrtrix3

License:

MOZILLA / MPL-2.0

Recipe:

/mrtrix3/meta.yaml

package mrtrix3

versions:

3.0.4-0

depends _openmp_mutex:

>=4.5

depends fftw:

>=3.0

depends fftw:

>=3.3.10,<4.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libtiff:

>=4.0

depends libtiff:

>=4.7.0,<4.8.0a0

depends libxcb:

>=1.17.0,<2.0a0

depends libzlib:

>=1.3.1,<2.0a0

depends qt:

>=5.15

depends zlib:

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mrtrix3

and update with::

   mamba update mrtrix3

To create a new environment, run:

mamba create --name myenvname mrtrix3

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mrtrix3:<tag>

(see `mrtrix3/tags`_ for valid values for ``<tag>``)

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