MS-GF+ is a new MS/MS database search tool that is sensitive (it identifies more peptides than other database search tools and as many peptides as spectral library search tools) and universal (works well for diverse types of spectra, different configurations of MS instruments and different experimental protocols).
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install msgf_plus
and update with:
conda update msgf_plus
A Docker container is available at https://quay.io/repository/biocontainers/msgf_plus.