recipe mtb-snp-it

SNP-IT: Whole genome SNP based identification of members of the Mycobacterium tuberculosis complex.

Homepage

https://github.com/samlipworth/snpit

License

MIT

Recipe

/mtb-snp-it/meta.yaml

Links

doi: 10.3201/eid2503.180894

Whole genome SNP based identification of members of the Mycobacterium tuberculosis complex. Based on code originally written by Samuel Lipworth and turned into a package by Philip Fowler.

SNP-IT allows rapid Mycobacterial speciation of VCF or FASTA files aligned to NC000962 (H37rV).

package mtb-snp-it

(downloads) docker_mtb-snp-it

Versions

1.1-11.1-00.1.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mtb-snp-it

and update with:

conda update mtb-snp-it

or use the docker container:

docker pull quay.io/biocontainers/mtb-snp-it:<tag>

(see mtb-snp-it/tags for valid values for <tag>)