-
recipe
mtbseq
Pipeline for WGS analysis of M. tuberculosis
- Homepage
- License
GPLv3
- Recipe
MTBseq is a semi-automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from Illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates
-
package
mtbseq
¶ -
- Versions
1.0.4-1
,1.0.4-0
,1.0.3-1
,1.0.3-0
- Depends
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install mtbseq
and update with:
conda update mtbseq
or use the docker container:
docker pull quay.io/biocontainers/mtbseq:<tag>
(see mtbseq/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/mtbseq/README.html)