recipe mtglink

MTG-link is a tool for gap-filling of scaffolds with linked-read data using MindTheGap

Homepage

https://github.com/anne-gcd/MTG-Link

License

file

Recipe

/mtglink/meta.yaml

package mtglink

Versions

2.3.2-0,  2.3.1-0,  2.3.0-0,  2.2.1-0,  2.2.0-0,  2.1.0-0,  2.0.0-0,  1.2.0-0,  1.1.0-2, 

2.3.2-0,  2.3.1-0,  2.3.0-0,  2.2.1-0,  2.2.0-0,  2.1.0-0,  2.0.0-0,  1.2.0-0,  1.1.0-2,  1.1.0-0,  1.0.2-1,  1.0.2-0,  1.0.1-0,  1.0.0-0

Depends

• biopython

• blast

• gfapy

• lrez >=2.2.2

• mindthegap >=2.2.3

• mummer

• pathos

• python >=3

• samtools

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mtglink

and update with:

conda update mtglink

or use the docker container:

docker pull quay.io/biocontainers/mtglink:<tag>

(see mtglink/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mtglink/README.html)