recipe multigps

MultiGPS is a framework for analyzing collections of multi-condition ChIP-seq datasets and characterizing differential binding events between conditions.

Homepage:

http://mahonylab.org/software/multigps/

License:

MIT

Recipe:

/multigps/meta.yaml

package multigps

versions:

0.74-3,  0.74-2,  0.74-1,  0.74-0,  0.73-1,  0.73-0,  0.72-1,  0.72-0,  0.5-1

depends bioconductor-edger:

depends meme:

>=4.11.2

depends openjdk:

>=8

depends r-base:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install multigps

and update with::

   mamba update multigps

To create a new environment, run:

mamba create --name myenvname multigps

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/multigps:<tag>

(see `multigps/tags`_ for valid values for ``<tag>``)

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