recipe multiqc-xenium-extra

MultiQC plugin for extra Xenium spatial transcriptomics analysis

Homepage:

https://seqera.io/multiqc

Documentation:

https://docs.seqera.io/multiqc/modules/xenium

Developer docs:

https://github.com/MultiQC/xenium-extra

License:

MIT

Recipe:

/multiqc-xenium-extra/meta.yaml

package multiqc-xenium-extra

versions:

1.0.1-0

depends multiqc:

>=1.32

depends polars-lts-cpu:

depends python:

>=3.9

depends scanpy:

>=1.9.0

depends scipy:

>=1.8.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install multiqc-xenium-extra

and update with::

   mamba update multiqc-xenium-extra

To create a new environment, run:

mamba create --name myenvname multiqc-xenium-extra

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/multiqc-xenium-extra:<tag>

(see `multiqc-xenium-extra/tags`_ for valid values for ``<tag>``)

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Link to this page

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