recipe multiqc

Create aggregate bioinformatics analysis reports across many samples and tools

Homepage:

http://multiqc.info

Documentation:

http://multiqc.info/docs/

Developer docs:

https://github.com/ewels/MultiQC

License:

GPL3 / GNU General Public License v3 (GPLv3)

Recipe:

/multiqc/meta.yaml

Links:

biotools: multiqc, doi: https://doi.org/10.1093/bioinformatics/btw354

package multiqc

Versions:

1.14-0,  1.13-0,  1.13a-1,  1.13a-0,  1.12-0,  1.11-0,  1.10.1-1,  1.10.1-0,  1.10-1, 

1.14-0,  1.13-0,  1.13a-1,  1.13a-0,  1.12-0,  1.11-0,  1.10.1-1,  1.10.1-0,  1.10-1,  1.10-0,  1.9-1,  1.9-0,  1.8-2,  1.8-1,  1.8-0,  1.7-4,  1.7-3,  1.7-2,  1.7-1,  1.7-0,  1.6-0,  1.6a0-2,  1.6a0-1,  1.6a0-0,  1.5-0,  1.5a-0,  1.4-0,  1.3-2,  1.3-1,  1.3-0,  1.2-0,  1.1-0,  1.0-4,  1.0-1,  1.0-0,  0.9.1a0-4,  0.9.1a0-3,  0.9.1a0-2,  0.9.1a0-1,  0.9.1a0-0,  0.9-0,  0.9a-0,  0.8-0,  0.8dev0-0,  0.7.1dev0-1,  0.7.1dev0-0,  0.7-0,  0.6-0,  0.5-0,  0.4-0

Depends:

• click

• coloredlogs

• future >0.14.0

• jinja2 >=3.0.0

• lzstring

• markdown

• matplotlib-base >=2.1.1

• networkx >=2.5.1

• numpy

• python >=3.6

• pyyaml >=4

• requests

• rich >=10

• rich-click

• setuptools

• simplejson

• spectra >=0.0.10

Required By:

• quantpi

• capcruncher

• multiqc-bcbio

• harpy

• artic

• pyrpipe

• dadaist2-full

• pggb

• sequana

• zavolan-multiqc-plugins

• trnanalysis

• multiqc_sav

• minute

• pmultiqc

• drax

• snakelines

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install multiqc

and update with:

conda update multiqc

or use the docker container:

docker pull quay.io/biocontainers/multiqc:<tag>

(see multiqc/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/multiqc/README.html)