recipe mutmap

MutMap: pipeline to identify causative mutations responsible for a phenotype

Homepage

https://github.com/YuSugihara/MutMap

License

GPL / GPL-3.0-or-later

Recipe

/mutmap/meta.yaml

Links

biotools: mutmap, doi: 10.1038/nbt.2095

package mutmap

Versions

2.3.3-0,  2.3.2-0,  2.3.0-1,  2.3.0-0,  2.2.0-0,  2.1.8-0,  2.1.7-0,  2.1.6-0,  2.1.3-0, 

2.3.3-0,  2.3.2-0,  2.3.0-1,  2.3.0-0,  2.2.0-0,  2.1.8-0,  2.1.7-0,  2.1.6-0,  2.1.3-0,  2.1.2-0,  2.1.1-0,  2.1.0-0,  2.0.9-0,  2.0.8-0,  2.0.7-0,  2.0.6-0,  2.0.5-0

Depends

• bcftools >=1.7

• bwa

• htslib

• matplotlib-base

• numpy

• pandas

• python >=3.5

• samtools >=1.7

• seaborn

• snpeff

• trimmomatic

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mutmap

and update with:

conda update mutmap

or use the docker container:

docker pull quay.io/biocontainers/mutmap:<tag>

(see mutmap/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mutmap/README.html)