recipe mvirs

mVIRs: Localisation of inducible prophages using NGS data

Homepage:

https://github.com/SushiLab/mVIRs

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/mvirs/meta.yaml

Links:

https: :https:`//doi.org/10.1186/s40168-021-01033-w`

package mvirs

versions:

1.1.1-0

depends bwa:

>=0.7.17

depends pysam:

>=0.15.2

depends python:

>=3.8

depends samtools:

>=1.9

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mvirs

and update with::

   mamba update mvirs

To create a new environment, run:

mamba create --name myenvname mvirs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mvirs:<tag>

(see `mvirs/tags`_ for valid values for ``<tag>``)

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Link to this page

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