- recipe n50
calculate N50 from FASTA/FASTQ files, producing both machine and human friendly outputs
- Homepage:
- Documentation:
https://github.com/quadram-institute-bioscience/seqfu/wiki/n50
- Developer docs:
- License:
mit
- Recipe:
- Links:
biotools: n50, doi: 10.3390/bioengineering8050059
a program to calculate size metrics of a FASTA (or FASTQ) file: minimum, maximum, average length, N50, N75, N90 and the area of the Nx curve (auN). Gzipped files are supported as input, and the output can be in compact, csv, tsv, json or screen friendly format.
- package n50¶
-
- Versions:
1.5.6-0
,1.5.5-0
,1.5.4-0
,1.5.0-0
,1.4.10-1
,1.4.10-0
,1.4.2-2
,1.4.2-1
,1.4.2-0
,1.5.6-0
,1.5.5-0
,1.5.4-0
,1.5.0-0
,1.4.10-1
,1.4.10-0
,1.4.2-2
,1.4.2-1
,1.4.2-0
,1.4.1-0
,1.3.0-1
,1.3.0-0
,1.2.0-0
,1.0.0-0
,0.92-0
,0.90-0
,0.83-0
,0.82-0
,0.80-0
,0.60-3
,0.60-2
,0.60-1
,0.60-0
- Depends:
perl
>=5.32.1,<6.0a0 *_perl5
perl-fastx-reader
>=1.8.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install n50
and update with:
conda update n50
or use the docker container:
docker pull quay.io/biocontainers/n50:<tag>
(see n50/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/n50/README.html)