recipe nanocaller

NanoCaller for accurate detection of SNPs and indels in difficult-to-map regions from long-read sequencing.

Homepage:

https://github.com/WGLab/NanoCaller

License:

MIT / MIT

Recipe:

/nanocaller/meta.yaml

package nanocaller

Versions:

3.2.0-0,  3.1.0-0,  3.0.1-0,  3.0.0-0,  2.1.2-1,  2.1.2-0,  2.1.1-0,  2.1.0-0,  2.0.0-0

Depends:

• bcftools

• intervaltree

• muscle >=3.8,<4

• numpy >=1.18,<1.19

• parasail-python

• pysam

• python >=3.8,<3.9

• rtg-tools

• samtools >=1.10

• tensorflow >=2.7,<2.8

• tqdm

• vcflib

• whatshap >=1.4

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install nanocaller

and update with:

conda update nanocaller

or use the docker container:

docker pull quay.io/biocontainers/nanocaller:<tag>

(see nanocaller/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanocaller/README.html)