recipe nanopack

A meta package for several long read processing and analysis tools.

Homepage:

https://github.com/wdecoster/nanopack

License:

GPL3 / GPL-3.0-only

Recipe:

/nanopack/meta.yaml

package nanopack

versions:

1.1.1-0

depends cramino:

depends nanocomp:

depends nanofilt:

depends nanoget:

depends nanolyse:

depends nanomath:

depends nanoplot:

depends nanoqc:

depends nanostat:

depends phasius:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nanopack

and update with::

   mamba update nanopack

To create a new environment, run:

mamba create --name myenvname nanopack

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nanopack:<tag>

(see `nanopack/tags`_ for valid values for ``<tag>``)

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