recipe nanosim

NanoSim is a fast and scalable read simulator that captures the technology-specific features of ONT data, and allows for adjustments upon improvement of nanopore sequencing technology.

Homepage

https://github.com/bcgsc/NanoSim

License

GPL

Recipe

/nanosim/meta.yaml

package nanosim

Versions

2.2.0-0, 2.1.0-0, 2.0.0-1, 2.0.0-0, v1.3.0-0, v1.2.0-0, v1.0.1-1

Depends

• htseq >=0.9.1

• last

• minimap2

• numpy >=1.13.3

• pybedtools >=0.7.10

• pysam >=0.13

• python

• scikit-learn >=0.20.0

• scipy >=1.0.0

• six >=1.10.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install nanosim

and update with:

conda update nanosim

or use the docker container:

docker pull quay.io/biocontainers/nanosim:<tag>

(see nanosim/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanosim/README.html)