recipe nanosim

NanoSim is a fast and scalable read simulator for Nanopore sequencing data.

Homepage:

https://github.com/bcgsc/NanoSim

License:

GPL-3.0

Recipe:

/nanosim/meta.yaml

Links:

doi: 10.1093/gigascience/gix010, doi: 10.1093/gigascience/giaa061

package nanosim

Versions:

3.1.0-0,  3.0.2-0,  3.0.0-0,  2.6.0-1,  2.6.0-0,  2.5.1-1,  2.5.1-0,  2.5.0-0,  2.2.0-0, 

3.1.0-0,  3.0.2-0,  3.0.0-0,  2.6.0-1,  2.6.0-0,  2.5.1-1,  2.5.1-0,  2.5.0-0,  2.2.0-0,  2.1.0-0,  2.0.0-1,  2.0.0-0,  v1.3.0-0,  v1.2.0-0,  v1.0.1-1

Depends:

• genometools-genometools

• htseq >=0.9.1

• joblib

• last

• minimap2

• numpy >=1.13.3

• pybedtools >=0.7.10

• pysam >=0.13

• python

• samtools

• scikit-learn >=0.20.0

• scipy >=1.0.0

• six >=1.10.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install nanosim

and update with:

conda update nanosim

or use the docker container:

docker pull quay.io/biocontainers/nanosim:<tag>

(see nanosim/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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