recipe ncbi-amrfinderplus

AMRFinderPlus finds antimicrobial resistance and other genes in protein or nucleotide sequences.

Homepage:

https://github.com/ncbi/amr/wiki

License:

Public Domain

Recipe:

/ncbi-amrfinderplus/meta.yaml

This software and the accompanying database are designed to find acquired antimicrobial resistance genes in bacterial protein or nucleotide sequences as well as known point mutations for several taxa. With AMRFinderPlus we have added select members of additional classes of genes such as virulence factors, biocide, heat, acid, and metal resistance genes.

package ncbi-amrfinderplus

Versions:

3.11.2-0,  3.10.45-0,  3.10.42-0,  3.10.40-1,  3.10.40-0,  3.10.36-1,  3.10.36-0,  3.10.30-1,  3.10.30-0, 

3.11.2-0,  3.10.45-0,  3.10.42-0,  3.10.40-1,  3.10.40-0,  3.10.36-1,  3.10.36-0,  3.10.30-1,  3.10.30-0,  3.10.24-0,  3.10.23-1,  3.10.23-0,  3.10.21-0,  3.10.20-0,  3.10.18-0,  3.10.16-0,  3.10.14-0,  3.10.5-0,  3.10.1-1,  3.10.1-0,  3.9.8-0,  3.9.3-0,  3.8.28-0,  3.8.4-1,  3.8.4-0,  3.6.15-0,  3.6.10-0,  3.6.7-0,  3.6.4-0,  3.2.3-0,  3.2.1-0,  3.1.1b-0,  3.0.12-0,  3.0.11-0,  3.0.9-0,  3.0.8-0

Depends:

• blast >=2.9

• curl

• hmmer >=3.2

• libcurl >=7.86.0,<8.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

Required By:

• bakta

• bactopia

• abritamr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ncbi-amrfinderplus

and update with:

conda update ncbi-amrfinderplus

or use the docker container:

docker pull quay.io/biocontainers/ncbi-amrfinderplus:<tag>

(see ncbi-amrfinderplus/tags for valid values for <tag>)

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