nextgenmap

downloads

NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime.

Home https://github.com/philres/NextGenMap
Versions 0.5.3
License Artistic License (Perl) 1.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/nextgenmap

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install nextgenmap

and update with:

conda update nextgenmap

docker

A Docker container is available at https://quay.io/repository/biocontainers/nextgenmap.