NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime.
|License||Artistic License (Perl) 1.0|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install nextgenmap
and update with:
conda update nextgenmap
A Docker container is available at https://quay.io/repository/biocontainers/nextgenmap.