recipe nextstrain-cli

The Nextstrain command-line interface (CLI)

Homepage

https://docs.nextstrain.org/projects/cli/

Developer docs

https://github.com/nextstrain/cli

License

MIT / MIT

Recipe

/nextstrain-cli/meta.yaml

The Nextstrain command-line interface (CLI)—a program called nextstrain—aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

package nextstrain-cli

(downloads) docker_nextstrain-cli

Versions

3.0.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install nextstrain-cli

and update with:

conda update nextstrain-cli

or use the docker container:

docker pull quay.io/biocontainers/nextstrain-cli:<tag>

(see nextstrain-cli/tags for valid values for <tag>)

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