ngmlr

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ngmlr is a long-read mapper designed to align PacBio or Oxford Nanopore reads to a reference genome and optimized for structural variation detection

Home https://github.com/philres/ngmlr
Versions 0.2.2, 0.2.3, 0.2.4, 0.2.5
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ngmlr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ngmlr

and update with:

conda update ngmlr

docker

A Docker container is available at https://quay.io/repository/biocontainers/ngmlr.