recipe ngmlr

ngmlr is a long-read mapper designed to align PacBio or Oxford Nanopore reads to a reference genome and optimized for structural variation detection

Homepage:

https://github.com/philres/ngmlr

License:

MIT

Recipe:

/ngmlr/meta.yaml

package ngmlr

Versions:

0.2.7-6,  0.2.7-5,  0.2.7-4,  0.2.7-3,  0.2.7-2,  0.2.7-1,  0.2.7-0,  0.2.6-1,  0.2.6-0, 

0.2.7-6,  0.2.7-5,  0.2.7-4,  0.2.7-3,  0.2.7-2,  0.2.7-1,  0.2.7-0,  0.2.6-1,  0.2.6-0,  0.2.5-0,  0.2.4-2,  0.2.4-1,  0.2.4-0,  0.2.3-2,  0.2.3-1,  0.2.3-0,  0.2.2-0

Depends:

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• zlib

Required By:

• vulcan

• read2tree

• svim

• rmetl

• lorikeet-genome

• telr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ngmlr

and update with:

conda update ngmlr

or use the docker container:

docker pull quay.io/biocontainers/ngmlr:<tag>

(see ngmlr/tags for valid values for <tag>)

Download stats

Link to this page

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