recipe ngs-tools

Reusable tools for working with next-generation sequencing (NGS) data

Homepage:

https://github.com/Lioscro/ngs-tools

Documentation:

https://ngs-tools.readthedocs.io/en/latest/

License:

MIT / MIT

Recipe:

/ngs-tools/meta.yaml

package ngs-tools

versions:

1.8.6-0,  1.8.5-0,  1.8.4-0,  1.8.3-0,  1.8.2-0,  1.8.1-0,  1.8.0-0,  1.7.3-0,  1.7.2-0, 

1.8.6-0,  1.8.5-0,  1.8.4-0,  1.8.3-0,  1.8.2-0,  1.8.1-0,  1.8.0-0,  1.7.3-0,  1.7.2-0,  1.7.1-0,  1.7.0-0,  1.6.0-0,  1.5.14-0,  1.5.13-0,  1.5.12-1,  1.5.12-0,  1.5.11-0,  1.5.10-0,  1.5.9-1,  1.5.9-0,  1.5.8-0,  1.5.7-0,  1.5.6-0,  1.5.5-0,  1.5.4-0,  1.5.3-0,  1.5.2-0,  1.5.0-0,  1.4.0-0,  1.3.0-0

depends joblib:

>=1.0.1

depends numba:

>=0.53.1

depends numpy:

>=1.19.0

depends pysam:

>=0.16.0.1

depends pyseq-align:

>=1.0.0

depends python:

>=3.6

depends shortuuid:

>=1.0.1

depends tqdm:

>=4.50.0

depends typing-extensions:

>=3.7.4

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ngs-tools

and update with::

   mamba update ngs-tools

To create a new environment, run:

mamba create --name myenvname ngs-tools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ngs-tools:<tag>

(see `ngs-tools/tags`_ for valid values for ``<tag>``)

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