recipe ngs-tools

Reusable tools for working with next-generation sequencing (NGS) data

Homepage:

https://github.com/Lioscro/ngs-tools

Documentation:

https://ngs-tools.readthedocs.io/en/latest/

License:

MIT / MIT

Recipe:

/ngs-tools/meta.yaml

package ngs-tools

Versions:

1.8.3-0,  1.8.2-0,  1.8.1-0,  1.8.0-0,  1.7.3-0,  1.7.2-0,  1.7.1-0,  1.7.0-0,  1.6.0-0, 

1.8.3-0,  1.8.2-0,  1.8.1-0,  1.8.0-0,  1.7.3-0,  1.7.2-0,  1.7.1-0,  1.7.0-0,  1.6.0-0,  1.5.14-0,  1.5.13-0,  1.5.12-1,  1.5.12-0,  1.5.11-0,  1.5.10-0,  1.5.9-1,  1.5.9-0,  1.5.8-0,  1.5.7-0,  1.5.6-0,  1.5.5-0,  1.5.4-0,  1.5.3-0,  1.5.2-0,  1.5.0-0,  1.4.0-0,  1.3.0-0

Depends:

• joblib >=1.0.1

• numba >=0.53.1

• numpy >=1.19.0

• pysam >=0.16.0.1

• pyseq-align >=1.0.0

• python >=3.6

• shortuuid >=1.0.1

• tqdm >=4.50.0

• typing-extensions >=3.7.4

Required By:

• kb-python

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ngs-tools

and update with:

conda update ngs-tools

or use the docker container:

docker pull quay.io/biocontainers/ngs-tools:<tag>

(see ngs-tools/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ngs-tools/README.html)