- recipe ngseqbasic
Basic ChIP/DNaseI/ATAC analysis - from FASTQ to visualisation of tracks, in one command.
- Homepage:
http://userweb.molbiol.ox.ac.uk/public/telenius/NGseqBasicManual/external/instructionsBioconda.html
- License:
GPL-3.0
- Recipe:
- package ngseqbasic¶
-
- Versions:
2.0.1-1
,2.0.1-0
- Depends:
bedtools
==2.17.0
bowtie
==1.0.0
bowtie2
==2.3.0
flash
==1.2.11
perl
5.22.0.1
samtools
==0.1.19
trim-galore
==0.4.1
ucsc-bedclip
==332
ucsc-bedgraphpack
==332
ucsc-bedgraphtobigwig
==332
ucsc-bedtobigbed
==332
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install ngseqbasic
and update with:
conda update ngseqbasic
or use the docker container:
docker pull quay.io/biocontainers/ngseqbasic:<tag>
(see ngseqbasic/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/ngseqbasic/README.html)