novoalign

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Powerful tool designed for mapping of short reads onto a reference genome from Illumina, Ion Torrent, and 454 NGS platforms

Home http://www.novocraft.com/products/novoalign/
Versions 3.03.02, 3.04.04, 3.06.05, 3.07.00
License Commercial (requires license for multithreaded use)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/novoalign

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install novoalign

and update with:

conda update novoalign

Notes

Novoalign runs in single-threaded mode by default unless a “novoalign.lic” license file is provided in the same directory as its binaries. The license file can be copied in to the conda environment via the “novoalign-license-register” command.

docker

A Docker container is available at https://quay.io/repository/biocontainers/novoalign.