recipe novobreak

local assembly for breakpoint detection in cancer genomes

Homepage

https://github.com/czc/nb_distribution

License

MIT

Recipe

/novobreak/meta.yaml

package novobreak

Versions

1.1.3rc-8,  1.1.3rc-7,  1.1.3rc-6,  1.1.3rc-5,  1.1.3rc-4,  1.1.3rc-3,  1.1.3rc-2,  1.1.3rc-1,  1.1.3rc-0

Depends

• bwa >=0.7.10

• libgcc-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• perl

• samtools 1.*

• ssake

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install novobreak

and update with:

conda update novobreak

or use the docker container:

docker pull quay.io/biocontainers/novobreak:<tag>

(see novobreak/tags for valid values for <tag>)

Notes

This package makes novobreak available via a wrapper in PATH, called `run_novobreak`, which takes all arguments of the run_novoBreak.sh script except the first, which is automatically inferred.

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