recipe npinv

an accurate tool for detecting and genotyping inversion using multiple alignment long reads

Homepage

https://github.com/haojingshao/npInv

License

MIT

Recipe

/npinv/meta.yaml

Links

doi: 10.1186/s12859-018-2252-9

package npinv

(downloads) docker_npinv

Versions

1.24-21.24-11.24-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install npinv

and update with:

conda update npinv

or use the docker container:

docker pull quay.io/biocontainers/npinv:<tag>

(see npinv/tags for valid values for <tag>)

Notes

npinv is Java program that comes with a custom wrapper python script which I took from peptide-shaker. By default "-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with "npinv -Xms512m -Xmx1g"