recipe ntlink

Genome assembly scaffolder using long reads and minimizers

Homepage:

https://github.com/bcgsc/ntLink

License:

GPL-3.0

Recipe:

/ntlink/meta.yaml

package ntlink

versions:

1.3.11-1,  1.3.11-0,  1.3.10-2,  1.3.10-0,  1.3.9-4,  1.3.9-3,  1.3.9-2,  1.3.9-1,  1.3.9-0, 

1.3.11-1,  1.3.11-0,  1.3.10-2,  1.3.10-0,  1.3.9-4,  1.3.9-3,  1.3.9-2,  1.3.9-1,  1.3.9-0,  1.3.8-1,  1.3.8-0,  1.3.7-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.1-1,  1.2.1-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.1-0

depends abyss:

>=2.3.0

depends btllib:

>=1.7.1

depends make:

depends numpy:

depends python:

depends python-igraph:

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ntlink

and update with::

   mamba update ntlink

To create a new environment, run:

mamba create --name myenvname ntlink

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ntlink:<tag>

(see `ntlink/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ntlink/README.html)