recipe nucleoatac

Python package for calling nucleosomes using ATAC-Seq data. Also includes general scripts for working with paired-end ATAC-Seq data (or potentially other paired-end data).

Homepage

https://github.com/GreenleafLab/NucleoATAC

Documentation

http://nucleoatac.readthedocs.io/en/latest/

License

MIT / MIT

Recipe

/nucleoatac/meta.yaml

Links

doi: 10.1101/gr.192294.115

package nucleoatac

Versions

0.3.4-4,  0.3.4-3,  0.3.4-2,  0.3.4-1,  0.3.4-0,  0.3.1-0

Depends

• htslib >=1.10.2,<1.11.0a0

• libgcc-ng >=7.5.0

• matplotlib-base

• numpy >=1.16.5,<2.0a0

• pysam >=0.10.0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• scipy

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install nucleoatac

and update with:

conda update nucleoatac

or use the docker container:

docker pull quay.io/biocontainers/nucleoatac:<tag>

(see nucleoatac/tags for valid values for <tag>)

Link to this page

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