- recipe nucleoatac
Python package for calling nucleosomes using ATAC-Seq data. Also includes general scripts for working with paired-end ATAC-Seq data (or potentially other paired-end data).
- Homepage:
- Documentation:
- License:
MIT / MIT
- Recipe:
- Links:
- package nucleoatac¶
- versions:
0.3.4-7,0.3.4-6,0.3.4-5,0.3.4-4,0.3.4-3,0.3.4-2,0.3.4-1,0.3.4-0,0.3.1-0- depends htslib:
>=1.14,<1.23.0a0- depends libgcc-ng:
>=10.3.0- depends libzlib:
>=1.2.11,<1.3.0a0- depends matplotlib-base:
- depends numpy:
>=1.16.5,<2.0a0- depends pysam:
>=0.10.0- depends python:
>=2.7,<2.8.0a0- depends python_abi:
2.7.* *_cp27mu- depends scipy:
- depends zlib:
>=1.2.11,<1.3.0a0- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install nucleoatac and update with:: mamba update nucleoatac
To create a new environment, run:
mamba create --name myenvname nucleoatac
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/nucleoatac:<tag> (see `nucleoatac/tags`_ for valid values for ``<tag>``)
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Link to this page¶
Render an 
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