recipe oncocnv

a package to detect copy number changes in Deep Sequencing data

Homepage:

https://github.com/BoevaLab/ONCOCNV/blob/master/README.md

License:

GNU GPLv3

Recipe:

/oncocnv/meta.yaml

package oncocnv

Versions:

7.0-0

Depends:

• bedtools >=2.27.1

• bioconductor-dnacopy

• perl >=5.32.1,<6.0a0 *_perl5

• r-base >=4.2,<4.3.0a0

• r-digest

• r-fastica

• r-mass

• r-mclust

• r-pscbs

• r-remotes

• r-scales

• samtools >=1.16.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install oncocnv

and update with:

conda update oncocnv

or use the docker container:

docker pull quay.io/biocontainers/oncocnv:<tag>

(see oncocnv/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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