recipe oncogemini

OncoGEMINI is an adaptation of GEMINI intended for the improved identification of biologically and clincally relevant tumor variants from multi-sample and longitudinal tumor sequencing data

Homepage

https://github.com/fakedrtom/oncogemini

License

MIT

Recipe

/oncogemini/meta.yaml

package oncogemini

Versions

0.1.0-1,  0.1.0-0

Depends

• cyordereddict 0.2.2

• inheritance >=0.1.3

• numpy >=1.7.1,<=1.15.4

• pybedtools >=0.6.2

• pysam >=0.6

• python

• pyyaml >=3.10

• scipy >=0.12.0

• sqlalchemy >=1

• unidecode >=0.04.14

• vcf2db

• vcfanno

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install oncogemini

and update with:

conda update oncogemini

or use the docker container:

docker pull quay.io/biocontainers/oncogemini:<tag>

(see oncogemini/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/oncogemini/README.html)