recipe oncogemini

OncoGEMINI is an adaptation of GEMINI intended for the improved identification of biologically and clincally relevant tumor variants from multi-sample and longitudinal tumor sequencing data

Homepage:

https://github.com/fakedrtom/oncogemini

License:

MIT

Recipe:

/oncogemini/meta.yaml

package oncogemini

Versions:

1.0.0-0,  0.1.0-1,  0.1.0-0

Depends:

• cyordereddict 0.2.2

• inheritance >=0.1.3

• numpy >=1.7.1,<=1.15.4

• pybedtools >=0.6.2

• pysam >=0.6

• python

• pyyaml >=3.10

• scipy >=0.12.0

• sqlalchemy >=1

• unidecode >=0.04.14

• vcf2db

• vcfanno

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install oncogemini

and update with:

conda update oncogemini

or use the docker container:

docker pull quay.io/biocontainers/oncogemini:<tag>

(see oncogemini/tags for valid values for <tag>)

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