- recipe oncogemini
OncoGEMINI is an adaptation of GEMINI intended for the improved identification of biologically and clincally relevant tumor variants from multi-sample and longitudinal tumor sequencing data
- Homepage:
- License:
MIT
- Recipe:
- package oncogemini¶
-
- Versions:
1.0.0-0
,0.1.0-1
,0.1.0-0
- Depends:
cyordereddict
0.2.2
inheritance
>=0.1.3
numpy
>=1.7.1,<=1.15.4
pybedtools
>=0.6.2
pysam
>=0.6
pyyaml
>=3.10
scipy
>=0.12.0
sqlalchemy
>=1
unidecode
>=0.04.14
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install oncogemini
and update with:
conda update oncogemini
or use the docker container:
docker pull quay.io/biocontainers/oncogemini:<tag>
(see oncogemini/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/oncogemini/README.html)