recipe ont-tombo

Detection of modified bases from raw nanopore sequencing data.

Homepage

https://nanoporetech.github.io/tombo/

License

mpl-2.0

Recipe

/ont-tombo/meta.yaml

package ont-tombo

Versions

1.5-1, 1.5-0, 1.4-0, 1.3-1, 1.3-0, 1.2.1.2-0, 1.2.1-0, 1.2.1b-0, 1.2-0, 1.1.1-0, 1.1-0, 1.0-0

Depends

• cython

• future

• h5py

• mappy >=2.10

• numpy

• pyfaidx

• python >=2.7,<2.8.0a0

• r-base >=3.5.1,<3.5.2.0a0

• r-ggplot2

• r-gridextra

• rpy2 <=2.8.6

• scipy

• tqdm

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ont-tombo

and update with:

conda update ont-tombo

or use the docker container:

docker pull quay.io/biocontainers/ont-tombo:<tag>

(see ont-tombo/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ont-tombo/README.html)