recipe ont-tombo

Detection of modified bases from raw nanopore sequencing data.

Homepage

https://nanoporetech.github.io/tombo/

License

mpl-2.0

Recipe

/ont-tombo/meta.yaml

package ont-tombo

(downloads) docker_ont-tombo

Versions

1.5-1, 1.5-0, 1.4-0, 1.3-1, 1.3-0, 1.2.1.2-0, 1.2.1-0, 1.2.1b-0, 1.2-0, 1.1.1-0, 1.1-0, 1.0-0

Depends cython

Depends future

Depends h5py

Depends mappy

>=2.10

Depends numpy

Depends pyfaidx

Depends python

>=2.7,<2.8.0a0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-gridextra

Depends rpy2

<=2.8.6

Depends scipy

Depends tqdm

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ont-tombo

and update with:

conda update ont-tombo

or use the docker container:

docker pull quay.io/biocontainers/ont-tombo:<tag>

(see ont-tombo/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ont-tombo/README.html)