recipe ont-tombo

Detection of modified bases from raw nanopore sequencing data.

Homepage:

https://nanoporetech.github.io/tombo/

License:

mpl-2.0

Recipe:

/ont-tombo/meta.yaml

package ont-tombo

Versions:

1.5.1-2,  1.5.1-0,  1.5-2,  1.5-1,  1.5-0,  1.4-0,  1.3-1,  1.3-0,  1.2.1.2-0, 

1.5.1-2,  1.5.1-0,  1.5-2,  1.5-1,  1.5-0,  1.4-0,  1.3-1,  1.3-0,  1.2.1.2-0,  1.2.1-0,  1.2.1b-0,  1.2-0,  1.1.1-0,  1.1-0,  1.0-0

Depends:

• future

• h5py

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• mappy >=2.10

• numpy

• pyfaidx

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• r-base >=3.6,<3.7.0a0

• r-ggplot2

• r-gridextra

• rpy2 <=2.8.6

• scipy

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ont-tombo

and update with:

conda update ont-tombo

or use the docker container:

docker pull quay.io/biocontainers/ont-tombo:<tag>

(see ont-tombo/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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