recipe orfquant

SaTAnn is a method that annotates and quantifies translation at the single ORF level using Ribo-seq data.

Homepage:

https://github.com/ohlerlab/ORFquant

License:

GPL3 / GPL-3 or above

Recipe:

/orfquant/meta.yaml

package orfquant

Versions:

1.1.0-4,  1.1.0-3,  1.1.0-2,  1.1.0-1,  1.1.0-0

Depends:

• bioconductor-biocgenerics

• bioconductor-biostrings

• bioconductor-bsgenome

• bioconductor-genomicalignments

• bioconductor-genomicfeatures

• bioconductor-genomicfiles

• bioconductor-rtracklayer

• r-base >=4.2,<4.3.0a0

• r-cowplot

• r-devtools

• r-domc

• r-dplyr

• r-foreach

• r-ggplot2

• r-gridextra

• r-knitr

• r-magrittr

• r-multitaper

• r-purrr

• r-reshape2

• r-rmarkdown

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install orfquant

and update with:

conda update orfquant

or use the docker container:

docker pull quay.io/biocontainers/orfquant:<tag>

(see orfquant/tags for valid values for <tag>)

Download stats

Link to this page

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