recipe pal_finder

Find microsatellite repeat elements from sequencing reads and design PCR primers to amplify them

Homepage

http://sourceforge.net/projects/palfinder/

License

GPLv3

Recipe

/pal_finder/meta.yaml

Finds microsatellite repeat elements directly from raw 454 or Illumina paired-end sequencing reads, and designs PCR primers to amplify these repeat loci in an automated fashion. Exact matches to repeats or 2-, 3-, 4-, 5-, and/or 6-mers are located and primer3 is then used to generate primer pairs to amplify regions containing microsatellite loci.

package pal_finder

(downloads) docker_pal_finder

Versions

0.02.04-2, 0.02.04-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pal_finder

and update with:

conda update pal_finder

or use the docker container:

docker pull quay.io/biocontainers/pal_finder:<tag>

(see pal_finder/tags for valid values for <tag>)