recipe pangbank-api

API for managing the PanGBank pangenome database, including a CLI to add pangenomes to the database.

Homepage:

https://github.com/labgem/pangbank-api

License:

CeCiLL 2.1

Recipe:

/pangbank-api/meta.yaml

package pangbank-api

versions:

0.1.2-0

depends fastapi:

>=0.115.8

depends packaging:

>=24

depends pydantic-settings:

>=2.12.0

depends python:

>=3.10,<3.14

depends pyyaml:

>=6.0.2

depends sqlmodel:

>=0.0.22

depends typer:

>=0.15.1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pangbank-api

and update with::

   mamba update pangbank-api

To create a new environment, run:

mamba create --name myenvname pangbank-api

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pangbank-api:<tag>

(see `pangbank-api/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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