recipe parascopy

Calling paralog-specific copy number and sequence variants in duplicated genes using short-read whole-genome sequencing.

Homepage:

https://github.com/tprodanov/parascopy

License:

MIT

Recipe:

/parascopy/meta.yaml

package parascopy

Versions:

1.9.7-0,  1.9.1-0,  1.7.6-0,  1.7.4-0,  1.7.3-0,  1.7.1-0,  1.7.0-0,  1.6.2-0,  1.6.1-0, 

1.9.7-0,  1.9.1-0,  1.7.6-0,  1.7.4-0,  1.7.3-0,  1.7.1-0,  1.7.0-0,  1.6.2-0,  1.6.1-0,  1.5.0-0,  1.4.0-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.6-0,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.2-0,  1.1.0-0,  1.0.0-0

Depends:

• biopython >=1.70

• bwa >=0.7

• bzip2 >=1.0.8,<2.0a0

• htslib >=1.16,<1.17.0a0

• intervaltree >=3.0

• libgcc-ng >=12

• libstdcxx-ng >=12

• numpy >=1.15

• parasail-python >=1.2

• pysam >=0.17

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• samtools >=1.11

• scipy >=1.5

• simpleeval >=0.9

• tabixpp

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install parascopy

and update with:

conda update parascopy

or use the docker container:

docker pull quay.io/biocontainers/parascopy:<tag>

(see parascopy/tags for valid values for <tag>)

Download stats

Link to this page

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