- recipe parascopy
Calling paralog-specific copy number and sequence variants in duplicated genes using short-read whole-genome sequencing.
- Homepage:
- License:
MIT
- Recipe:
- package parascopy¶
-
- Versions:
1.9.7-0
,1.9.1-0
,1.7.6-0
,1.7.4-0
,1.7.3-0
,1.7.1-0
,1.7.0-0
,1.6.2-0
,1.6.1-0
,1.9.7-0
,1.9.1-0
,1.7.6-0
,1.7.4-0
,1.7.3-0
,1.7.1-0
,1.7.0-0
,1.6.2-0
,1.6.1-0
,1.5.0-0
,1.4.0-0
,1.3.4-0
,1.3.3-0
,1.3.2-0
,1.3.1-0
,1.3.0-0
,1.2.6-0
,1.2.4-0
,1.2.3-0
,1.2.2-0
,1.2.1-0
,1.2.0-0
,1.1.2-0
,1.1.0-0
,1.0.0-0
- Depends:
biopython
>=1.70
bwa
>=0.7
bzip2
>=1.0.8,<2.0a0
htslib
>=1.16,<1.17.0a0
intervaltree
>=3.0
libgcc-ng
>=12
libstdcxx-ng
>=12
numpy
>=1.15
parasail-python
>=1.2
pysam
>=0.17
python
>=3.10,<3.11.0a0
python_abi
3.10.* *_cp310
samtools
>=1.11
scipy
>=1.5
simpleeval
>=0.9
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install parascopy
and update with:
conda update parascopy
or use the docker container:
docker pull quay.io/biocontainers/parascopy:<tag>
(see parascopy/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/parascopy/README.html)