recipe parsnp

Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.

Homepage

https://github.com/marbl/parsnp

License

custom; see https://raw.githubusercontent.com/marbl/parsnp/master/LICENSE

Recipe

/parsnp/meta.yaml

package parsnp

(downloads) docker_parsnp

Versions

1.2-0

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install parsnp

and update with:

conda update parsnp

or use the docker container:

docker pull quay.io/biocontainers/parsnp:<tag>

(see parsnp/tags for valid values for <tag>)