recipe pasty

A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates

Homepage:

https://github.com/rpetit3/pasty

License:

Apache-2.0

Recipe:

/pasty/meta.yaml

package pasty

(downloads) docker_pasty

versions:

1.0.3-01.0.2-01.0.1-01.0.0-0

depends blast:

depends executor:

depends python:

>=3.7

depends rich-click:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pasty

and update with::

   mamba update pasty

To create a new environment, run:

mamba create --name myenvname pasty

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pasty:<tag>

(see `pasty/tags`_ for valid values for ``<tag>``)

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