- recipe pavfinder
PAVFinder is a Python package that detects structural variants from de novo assemblies.
- Homepage:
- License:
GPL-3.0
- Recipe:
- Links:
doi: 10.1186/s12920-018-0402-6, doi: 10.1093/bioinformatics/btz902
- package pavfinder¶
-
- Versions:
1.8.5-0
- Depends:
intspan
>=0.701
pybedtools
>=0.6.9
pysam
>=0.8.1
python
>=3
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install pavfinder
and update with:
conda update pavfinder
or use the docker container:
docker pull quay.io/biocontainers/pavfinder:<tag>
(see pavfinder/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/pavfinder/README.html)