recipe pbipa

Improved Phased Assembly

Homepage:

https://github.com/PacificBiosciences/pbbioconda

License:

BSD 3-Clause Clear License

Recipe:

/pbipa/meta.yaml

package pbipa

Versions:

1.8.0-2,  1.8.0-1,  1.8.0-0,  1.5.0-3,  1.5.0-2,  1.5.0-1,  1.5.0-0,  1.3.2-0,  1.3.1-0, 

1.8.0-2,  1.8.0-1,  1.8.0-0,  1.5.0-3,  1.5.0-2,  1.5.0-1,  1.5.0-0,  1.3.2-0,  1.3.1-0,  1.3.0-1,  1.3.0-0,  1.2.0-2,  1.2.0-1,  1.2.0-0,  1.1.2-0,  1.0.5-0,  1.0.3-0,  0.0.1-0

Depends:

• htslib >=1.17,<1.18.0a0

• libgcc-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• minimap2

• networkx

• pb-falconc >=1.15

• pcre >=8.45,<9.0a0

• racon

• samtools >=1.15

• snakemake-minimal >=7.0.4

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pbipa

and update with:

conda update pbipa

or use the docker container:

docker pull quay.io/biocontainers/pbipa:<tag>

(see pbipa/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pbipa/README.html)