recipe pbmm2

A minimap2 frontend for PacBio native data formats

Homepage

https://github.com/PacificBiosciences/pbmm2

License

BSD-3-Clause-Clear

Recipe

/pbmm2/meta.yaml

package pbmm2

Versions

1.4.0-0,  1.3.0-1,  1.3.0-0,  1.2.1-0,  1.1.0-0,  1.0.0-0,  0.12.0-0,  0.11.0-0,  0.10.1-1, 

1.4.0-0,  1.3.0-1,  1.3.0-0,  1.2.1-0,  1.1.0-0,  1.0.0-0,  0.12.0-0,  0.11.0-0,  0.10.1-1,  0.10.1-0,  0.10.0-0,  0.9.0-0,  0.8.1-0,  0.7.0-0,  0.6.0-0,  0.5.1-0

Depends

• htslib >=1.10.2,<1.11.0a0

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• zlib >=1.2.11,<1.3.0a0

Required By

• minorseq

• pbipa

• pb-assembly

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pbmm2

and update with:

conda update pbmm2

or use the docker container:

docker pull quay.io/biocontainers/pbmm2:<tag>

(see pbmm2/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pbmm2/README.html)